_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-38
 Query name: gi|941786220|ref|XP_014325199.1| PREDICTED: redox-regulatory protein FAM213A-like [Xiphophorus maculatus]
 Query range: 1-212  (total 212)

 Target: /data/www-rg/seblastian_results/185946133/tempfiles/temptarget.fasta
 Chromosome: OMLM01013374.1:subseq_0,54041_ Strand: +
 Positions:
 -Exon 1  2009         2153
 -Exon 2  2461         2552
 -Exon 3  2684         2824
 -Exon 4  3704         3868
 -Exon 5  3961         4053

 Redox box: YES

Query   MGMWSLGIGAVGAALAGIFLANTDMCLPKGASASLEHLEDADLRSTTDD <---Intron---> GKVIKAKSLWEKNGAVVMAVRRPGUFLCRE <---
        |||||||/||||||||||||||||/|| | | ||||/||||||| |  / <   307bp    >  ||||||||||||||||||||||||||||| <   
Target  MGMWSLGLGAVGAALAGIFLANTDLCLTKPAKASLEYLEDADLRCTLSE                DKVIKAKSLWEKNGAVVMAVRRPGUFLCRE     
        agattcgcggggggcggatcgaagcttaacgagttgtcggggcctatag                gagaagaactgaaggggaggcccgttttag     
        tgtgctgtgctgcctcgtttcacatgtcaccacctaataacatggctg                aaattacagtgaaagctttctggcggttgga     
        ggggggtgttaatcgagctgccttgtgtatcgatggctattcgcctat                acgccaagcggggctcgcgtgaataatgcag     
                                                                                                 *          

Query   Intron---> EASELSSLKPQLEELGVPLVAVVKENVGSEIQDFRPHFAGDIYVDEM <---Intron---> KHFYGPLQRKMGGLGFIRLGVWQNFI
        131bp    > ||||||||||||||||||||||||||/|/||/||||||||||||||  <   879bp    > |||||||||||||||||| |||||||
Target             EASELSSLKPQLEELGVPLVAVVKENIGTEIRDFRPHFAGDIYVDEK                KHFYGPLQRKMGGLGFIRFGVWQNFI
                   ggtgcttcacccggcggccggggagaagagacgtacctgggatggga                acttgcccaaaggtgtactggtcata
                   accatcctacataatgtcttcttaaatgcatgatgcatcgatataaa                aatagctagatggtgttgtgtgaatt
                   gctggctggcggggtgctgtttgggcccagtgccaacctgcctatag                atcctcgggggacgtttctagggcca
                                                                                                            

Query   RAWRSGYQGNMLGEGFILGGVFVIGPGDQ <---Intron---> GILLEHKEKQFGDKVDTADVLKAAQKIVPVK
        ||||||||||| ||||||||||||||||| <    92bp    > |||||| ||||||||||||||/| /|||| |
Target  RAWRSGYQGNMAGEGFILGGVFVIGPGDQ                GILLEHYEKQFGDKVDTADVLEAIKKIVPAK
        cgtatgtcgaaggggtacgggtgagcggc                gaccgctgactggaggagggtggaaaagcga
        gcggcgaagatcgagtttggttttgcgaa                gtttaaaaaatgaataccattactaattcca
        gtggtttgccgccgcctttagtcttaatg                atcggttgggtatggctattagtcgattaga
                                                                                    
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 463 ; UGA-SECIS: 877

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01013374.1:subseq_0,54041_ Strand = + Positions = 4517 - 4590
 Found by:  Infernal (score=36.97) Covels (score=29.55)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -19.36

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((((((.--....{[[{(((((({{(((...............)))}}))))))}]]}..--....)))))))))
 target  CCUGUGUGUG--AUAAUGACAACUUGGCUCUAAACUCAACACUGAGAGGAGCAAGUUUGAUGC--UCAAACAUACAGG
                         ****           ^^^                       ****